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volcano plot  (GraphPad Software Inc)


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    GraphPad Software Inc volcano plot
    Volcano Plot, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/volcano+plot/volcano+plot/pmc12276330-313-18-23
    Average 90 stars, based on 1 article reviews
    volcano plot - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Control:

    Article Title: Structural basis for hepatitis E virus neutralization by potent human antibodies.
    Article Snippet: The numbers of VH, Vκ, and Vλ mutations were compared across groups of antibodies using two- tailed Mann- Whitney test with GraphPad Prism software (v.8.4, GraphPad Prism Inc.). .. Volcano plot comparing gene features (n = 236 parameters) of HEVCA B cells and control memory B cells was performed using GraphPad Prism software (v.8.4, GraphPad Prism Inc.). ..

    Article Title: Histone methyltransferase ASH1L primes metastases and metabolic reprogramming of macrophages in the bone niche
    Article Snippet: .. The DEGs in monocytes and TAMs from control versus ASH1L-depleted bone tumors were analyzed using the Wilcoxon method, followed by volcano plot generation using GraphPad Prism version 9.2.0. ..

    Software:

    Article Title: Structural basis for hepatitis E virus neutralization by potent human antibodies.
    Article Snippet: The numbers of VH, Vκ, and Vλ mutations were compared across groups of antibodies using two- tailed Mann- Whitney test with GraphPad Prism software (v.8.4, GraphPad Prism Inc.). .. Volcano plot comparing gene features (n = 236 parameters) of HEVCA B cells and control memory B cells was performed using GraphPad Prism software (v.8.4, GraphPad Prism Inc.). ..

    Article Title: Lipidomics reveals different therapeutic potential for natural and synthetic vitamin D formulations in hepatocyte lipotoxicity.
    Article Snippet: Natural sources of vitamin D (VD), have been proposed to represent an alternative to synthetic vitamin D in nutritional interventions, also holding therapeutic potential in non-alcoholic fatty liver disease (NAFLD).. In this study lipidomics was used to comparatively investigate the molecular mechanisms behind the therapeutic effects of a natural VD formulation consisting of a Shitake mushroom extracts (NVD) and a synthetic cholecalciferol formulation (SVD) in HepaRG human hepatocytes exposed to free fatty acid (FFA)-induced lipotoxicity.. The results demonstrate that the two VD formulations prevent lipotoxicity with similar efficacy, but different lipidomic fingerprints.

    Article Title: Surface-engineered nanobeads for regioselective antibody binding: A robust immunoassay platform leveraging catalytic signal amplification.
    Article Snippet: .. To visualize the results of the label-free quantitative analysis of the proteins bound to CEPS and CPS1, a volcano plot was constructed between the two sample types using GraphPad Prism software (Boston, MA, USA). ..

    Generated:

    Article Title: Altered microbiota of the lower respiratory tract and its association with COVID-19 severity analysed by metagenomics and metatranscriptomics.
    Article Snippet: .. A volcano plot was generated using GraphPad Prism 8.0, based on the FDR values and Log2FoldChange. ..

    Construct:

    Article Title: Surface-engineered nanobeads for regioselective antibody binding: A robust immunoassay platform leveraging catalytic signal amplification.
    Article Snippet: .. To visualize the results of the label-free quantitative analysis of the proteins bound to CEPS and CPS1, a volcano plot was constructed between the two sample types using GraphPad Prism software (Boston, MA, USA). ..



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    Image Search Results


    a The genome-wide association signals for chalky grain rate (CGR) and degree of chalkiness (DC) in the region at 18–21 Mb on chromosome 9 ( x -axis) across two years. Negative log 10 -transformed P values from the linear mixed model are plotted on the y -axis. The horizontal dashed line indicates the genome-wide significance threshold ( P = 1×10 –6 ). P values were determined using a two-sided Wald test and assessed after Bonferroni correction for multiple comparisons. b Linkage disequilibrium (LD) heatmap of the Chalk9 locus region. Pairwise linkage disequilibrium was determined by calculating r 2 (the square of the correlation coefficient between SNPs). c Relative expression level of the 12 candidate genes in the endosperm of eight high-chalky and eight low-chalky varieties at 20 days after flowering (DAF). The 12 predicted genes in the Chalk9 locus region are labeled by I to XII. Data show means ± SD ( n = 8 varieties). P values were calculated for comparisons between high-chalky and low-chalky groups, with each group comprising 8 varieties. d Relative expression level of the candidate gene III ( Chalk9 ) in the endosperm from the selected varieties at 20 DAF. The P value was calculated for the comparison between high-chalky and low-chalky groups, with each group comprising 8 varieties. Data show means ± SD ( n = 3 biological replicates). e Relative expression level of the 12 candidate genes in the leaves of eight high-chalky and eight low-chalky varieties. Data show means ± SD ( n = 8 varieties). In c – e , statistical analysis between high-chalky and low-chalky groups was performed by two-tailed Student’s t -test. Source data are provided as a Source Data file.

    Journal: Nature Communications

    Article Title: Natural variation of an E3 ubiquitin ligase encoding gene Chalk9 regulates grain chalkiness in rice

    doi: 10.1038/s41467-025-61683-4

    Figure Lengend Snippet: a The genome-wide association signals for chalky grain rate (CGR) and degree of chalkiness (DC) in the region at 18–21 Mb on chromosome 9 ( x -axis) across two years. Negative log 10 -transformed P values from the linear mixed model are plotted on the y -axis. The horizontal dashed line indicates the genome-wide significance threshold ( P = 1×10 –6 ). P values were determined using a two-sided Wald test and assessed after Bonferroni correction for multiple comparisons. b Linkage disequilibrium (LD) heatmap of the Chalk9 locus region. Pairwise linkage disequilibrium was determined by calculating r 2 (the square of the correlation coefficient between SNPs). c Relative expression level of the 12 candidate genes in the endosperm of eight high-chalky and eight low-chalky varieties at 20 days after flowering (DAF). The 12 predicted genes in the Chalk9 locus region are labeled by I to XII. Data show means ± SD ( n = 8 varieties). P values were calculated for comparisons between high-chalky and low-chalky groups, with each group comprising 8 varieties. d Relative expression level of the candidate gene III ( Chalk9 ) in the endosperm from the selected varieties at 20 DAF. The P value was calculated for the comparison between high-chalky and low-chalky groups, with each group comprising 8 varieties. Data show means ± SD ( n = 3 biological replicates). e Relative expression level of the 12 candidate genes in the leaves of eight high-chalky and eight low-chalky varieties. Data show means ± SD ( n = 8 varieties). In c – e , statistical analysis between high-chalky and low-chalky groups was performed by two-tailed Student’s t -test. Source data are provided as a Source Data file.

    Article Snippet: Correlation analysis, heatmap plotting, and volcano plot analysis were performed using BMKCloud ( www.biocloud.net ).

    Techniques: GWAS, Transformation Assay, Genome Wide, Expressing, Labeling, Comparison, Two Tailed Test